Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30057
         (768 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.018
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   0.67 
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   0.67 
DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.      23   3.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.018
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 280 RCITANTETSSFYNQRYNFSFNFNHNDDYTQTHCYTFN*NYHYYCFSQTYDSH 438
           +C  +N    S  N+R   S      D      CY     Y++YC S T++ H
Sbjct: 18  KCTVSNVSLHSLKNKRSGASLQVGILDSLV-FKCYNLRRIYYFYCVSITFNVH 69


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 277 DRCITANTETSSFYNQRYNFSFNFNHNDDYTQTHCYTFN*NYHYY 411
           D     +TE+S  +N    F+FN+ +N  Y+  + Y    +  YY
Sbjct: 193 DETCQYDTESSYQFNDP-QFNFNYQYNQAYSNYNNYQEGFSCQYY 236


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +1

Query: 277 DRCITANTETSSFYNQRYNFSFNFNHNDDYTQTHCYTFN*NYHYY 411
           D     +TE+S  +N    F+FN+ +N  Y+  + Y    +  YY
Sbjct: 213 DETCQYDTESSYQFNDP-QFNFNYQYNQAYSNYNNYQEGFSCQYY 256


>DQ138189-1|ABA03053.1|  162|Tribolium castaneum bursicon protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 105 PSPYKADSCVGRCFQNITIT 164
           P P  + +C+GRC   I ++
Sbjct: 57  PKPIPSFACIGRCASYIQVS 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,537
Number of Sequences: 336
Number of extensions: 2647
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)