Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_D21
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    22   5.1  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   5.1  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.9  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = -2

Query: 481 SRVPLSNTTLNASSSKDILVASMHINFILVLALFTFFICLI 359
           S+VP  +T  N   S    +  + + FI+ L +     C+I
Sbjct: 220 SKVPACHTLANTFWSALYFLTIIFLFFIIPLIILLILYCII 260


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 311 RCWICKYNKCGCLG 352
           RC  C+Y KC  +G
Sbjct: 137 RCQYCRYQKCLNMG 150


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 615 TWQVCDSVRVICKQSVLR 562
           T +VCD   V CK + LR
Sbjct: 130 TGKVCDVEMVSCKDAALR 147


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 549 RVLXLGGRFVCISLLQSHILAKLME 623
           RV  LGG F+    L +HI  K++E
Sbjct: 41  RVNQLGGVFINGRPLPNHIRLKIVE 65


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,955
Number of Sequences: 336
Number of extensions: 2939
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)