SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP01_F_A15
         (409 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.5  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    22   2.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    22   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   4.6  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         20   8.1  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 317 YINLCVKLTKPSKMT 361
           Y  +CVKL  P K+T
Sbjct: 330 YPEVCVKLANPQKLT 344


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 210 RTGPFTFLMI*RLVS 166
           RTG FTFLM+  ++S
Sbjct: 76  RTGSFTFLMVVAVLS 90


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 210 RTGPFTFLMI*RLVS 166
           RTG FTFLM+  ++S
Sbjct: 76  RTGSFTFLMVVAVLS 90


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 46  CNKHTCNQSWRVSKS 2
           C+K TC + +R+ KS
Sbjct: 889 CDKATCEKLFRMKKS 903


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -3

Query: 158 TRPSLEYTGPENQYGQALSRHEQER 84
           T+ +L       QY Q+  RH Q R
Sbjct: 190 TQYNLNSKSLPRQYSQSRGRHNQSR 214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,245
Number of Sequences: 336
Number of extensions: 1749
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)

- SilkBase 1999-2022 -