Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b06f
         (640 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    24   0.93 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    24   0.93 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    24   0.93 
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    23   2.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   3.8  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   5.0  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   5.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.6  

>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 229 SAETSVCSDNGIIIAGDGYNTTSV 158
           +AE   CS   I + GDGY   S+
Sbjct: 449 NAENGSCSGKTITVGGDGYADISL 472



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 542 GSYGAHSVR*GRNYIHIPY 486
           G+ G+ + R G+NY  +PY
Sbjct: 125 GTAGSQADRDGKNYPAVPY 143


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 229 SAETSVCSDNGIIIAGDGYNTTSV 158
           +AE   CS   I + GDGY   S+
Sbjct: 450 NAENGSCSGKTITVGGDGYADISL 473



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 542 GSYGAHSVR*GRNYIHIPY 486
           G+ G+ + R G+NY  +PY
Sbjct: 126 GTAGSQADRDGKNYPAVPY 144


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 229 SAETSVCSDNGIIIAGDGYNTTSV 158
           +AE   CS   I + GDGY   S+
Sbjct: 450 NAENGSCSGKTITVGGDGYADISL 473



 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -3

Query: 542 GSYGAHSVR*GRNYIHIPY 486
           G+ G+ + R G+NY  +PY
Sbjct: 126 GTAGSQADRDGKNYPAVPY 144


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 422 LYYKRFFPYYVSNVL 466
           +++KRF P YVS +L
Sbjct: 168 VFFKRFLPVYVSYLL 182


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 408 ICATAGVVIDLLCSC 364
           IC T GV+I + C C
Sbjct: 42  ICYTIGVIITIGCLC 56


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 329 SRLMCHTSSQSLPILYSQI 273
           SR+M H +S   PILY+ I
Sbjct: 338 SRIMFHINSAVNPILYNII 356


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +3

Query: 114 LCLVRNSIVSSPTRTTEVVL*PSPAMIMP 200
           LC+V NS+      T   V  P  A I P
Sbjct: 306 LCVVNNSVGGESVETVLTVTAPLKAKIEP 334


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 405 RCSQLCCITNDFSHTTYPTCWRVWTATVRDVYIVTTLSDTVRAITSALVVPLLHSCNR-S 581
           R  Q+  +    + T YP+    +  + R+   +  L+    A +S + +P LHS +   
Sbjct: 358 RAYQVAVLEYKGTQTNYPSYEPTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLDEWD 417

Query: 582 STIK 593
            T+K
Sbjct: 418 DTLK 421


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,479
Number of Sequences: 336
Number of extensions: 3698
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16501678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)