Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_G13
         (572 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   5.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 464 FANLLDFTSAFEAQDERSLRWRVDGXP 384
           F     FT  FE    +++ W  DG P
Sbjct: 341 FGRPATFTCNFEGNPIKTISWLKDGHP 367


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 527 GPSAVLGKSHHLIAHLK 477
           G   V GK+ HL AHL+
Sbjct: 321 GCGKVYGKTSHLKAHLR 337


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 260 TGFGGLKTVKIL 295
           TG GGL+ +K+L
Sbjct: 217 TGLGGLQNIKVL 228


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 142 EDPDRKWCY*NTARGNARKIYR 207
           ++PD KW   ++++   R  YR
Sbjct: 223 DEPDHKWKKNDSSKKKTRYYYR 244


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,806
Number of Sequences: 336
Number of extensions: 2222
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14203976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)