Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_B21
         (943 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.85 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.0  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 882 PPXPLXPPPPXPXXXPP 932
           PP P  PP P P   PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191



 Score = 23.0 bits (47), Expect = 3.4
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +2

Query: 857 PSXXXXPPXPXPPXXPP 907
           P     PP P PP  PP
Sbjct: 175 PPLPQVPPLPLPPIFPP 191


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 585 PPPPPPP 605
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 900 PPPPXPXXXPP 932
           PPPP P   PP
Sbjct: 736 PPPPHPHHQPP 746


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 900 PPPPXPXXXPP 932
           PPPP P   PP
Sbjct: 628 PPPPHPHHQPP 638


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 685 PPXXGAPPPXXPXXXXPP 738
           PP  G PP   P    PP
Sbjct: 68  PPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,108
Number of Sequences: 336
Number of extensions: 5994
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26478848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)