Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20096
         (719 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.47 
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   7.6  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.6  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 526 MLTKGGPDSTSI*NNFSKTIQDEFQQVNAPPNLR 425
           +LTK  P   SI NN S +       V A P+LR
Sbjct: 150 ILTKTSPTPVSINNNTSTSSSASSPSVTAAPHLR 183


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -3

Query: 180 DCSLGGRDSGKPNFVLMQLHW*HN 109
           DC++GG D  K  F+ + ++  H+
Sbjct: 71  DCNIGGYDFPKDTFLSLFIYGMHH 94


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 701 HIRSLYFRQTYNVYGSRFRS*RCGNSDG*FMQLLLMRIPRAMRVD-LEYRRKAT 543
           HI S      YN+  S+FRS   G     F +L  M+I +  R D  E  RK+T
Sbjct: 343 HINSAVNPILYNIISSKFRS---G-----FFKLCGMKIVKKRRKDKREITRKST 388


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -2

Query: 280 WCMYEAYSRA 251
           WC Y AYS A
Sbjct: 147 WCNYSAYSSA 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,085
Number of Sequences: 336
Number of extensions: 4477
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)