Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c14
         (542 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           30   0.015
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   0.75 
AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    22   3.0  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   3.0  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   3.0  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    22   4.0  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.2  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.2  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.2  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.2  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.2  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.2  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.2  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   9.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.2  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.2  

>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 29.9 bits (64), Expect = 0.015
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
 Frame = +1

Query: 124 KGSLRNGQDYFRDKRSQYGTYY----TSPCGGASSAPIPTYPSAGYHGQAPAQAGYGTNY 291
           +GSL+  + Y+ +   QY +Y     T  C  ASS+P P++ S        A + Y TN 
Sbjct: 168 EGSLQENR-YYNNSPDQYQSYQILLPTPTCSEASSSPTPSHSS---ESSFSAASSY-TNT 222

Query: 292 VYGGPHYRLADPAEFDPEML 351
           +Y   ++   +P   + E L
Sbjct: 223 IYHQENFENYEPKSPEDEEL 242


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 24.2 bits (50), Expect = 0.75
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 430 RNSHVLPSAFDAYAAYVACIGPYP 359
           RN    P  +  + A +AC+GP P
Sbjct: 155 RNGGRAPLTYHQFLAIIACMGPPP 178


>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 227 LPTHRLDTMARHLPRRDMEQTTSTEDLT 310
           LP H +     HL + D    +  EDL+
Sbjct: 67  LPGHTIIASNHHLAKSDTSSASGREDLS 94


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  VMELYMWIYFSITTTTMVVGAPSVLPDTKGS 132
           V+E+Y+ +Y   +T       PS+L + + +
Sbjct: 300 VVEIYLLVYACASTCEQANDTPSILHELRNN 330


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 8/31 (25%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  VMELYMWIYFSITTTTMVVGAPSVLPDTKGS 132
           V+E+Y+ +Y   +T       PS+L + + +
Sbjct: 300 VVEIYLLVYACASTCEQANDTPSILHELRNN 330


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 235 PSAGYHGQAPAQAGYG 282
           P+ GY+   PA A YG
Sbjct: 62  PTTGYYPYDPALAAYG 77


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 18  PGHGLQP 24


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +1

Query: 199 CGGASSAPIPTYPSAGYHGQAPAQAGYGTNYVYGGP 306
           CGG   A     P+    G A A  G       GGP
Sbjct: 267 CGGEEEAERAPAPAVRAAGDAAAARGAARADGAGGP 302


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -2

Query: 259 PGHGIQP 239
           PGHG+QP
Sbjct: 62  PGHGLQP 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,796
Number of Sequences: 336
Number of extensions: 2851
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13306679
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)