Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10c10
         (623 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    25   0.39 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   4.8  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   4.8  

>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 257 FIINYITCCLYSLRHSHIVTDKASICLFGWILH 159
           F +N    CL+ ++HSH  TDK    +  W ++
Sbjct: 5   FWVNLALFCLH-VQHSHGATDKVICYVASWAIY 36


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +3

Query: 456  TLDQHYFPSADDFPHGMPN-NSPPRNIKTYRSQGDGARTT 572
            T D     +++   HG+    +    +  Y S GDG RTT
Sbjct: 1151 TKDTKITAASETILHGLKKYTNYSMEVLAYTSGGDGVRTT 1190


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +3

Query: 450 IITLDQHYFP--SADDF 494
           I+TL  HYFP  SA D+
Sbjct: 342 IVTLSAHYFPVFSACDY 358


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +3

Query: 450 IITLDQHYFP--SADDF 494
           I+TL  HYFP  SA D+
Sbjct: 268 IVTLSTHYFPVFSACDY 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,877
Number of Sequences: 336
Number of extensions: 4104
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)