Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b16
         (582 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      25   0.62 
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    22   4.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   4.4  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   5.8  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 190 NTSVDRDLESVQSQATNQNTQVHAQSTNEEVILEVYLETDMNRNLGDDQVHVHAPKG 360
           +T + R+L S+Q     +  Q    STNE V  EV L  D N +     +H+    G
Sbjct: 120 STGLRRNLSSLQ---IGEKIQALDPSTNELVFSEVLLFLDYNPSQKRQFLHITLASG 173


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 447 MNLIDSWSVIFLISYFYIWIYI 382
           +N I  W ++FLI+Y  + I +
Sbjct: 221 VNDIFGWQILFLITYATLQILV 242


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 447 MNLIDSWSVIFLISYFYIWIYI 382
           +N I  W ++FLI+Y  + I +
Sbjct: 221 VNDIFGWQILFLITYATLQILV 242


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +2

Query: 38  VIYYKIVRYRMG*PIAQLQDKENAPREK*IS*EKTIFKQFGCVV 169
           ++Y  I +  M  P+A    K   P +  I   K +    G VV
Sbjct: 255 IVYILIAKTLMHHPVAMTGTKTVMPSQSAIKYRKQVILMLGTVV 298


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,419
Number of Sequences: 336
Number of extensions: 1984
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)