Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d06
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   4.1  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.5  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 496 FFCSGLVELTAAMSQNFATLLVMRFASGFL 585
           +FC  +V L +A++     L+  +F +GF+
Sbjct: 334 YFCRIMVYLNSAINPILYNLMSSKFRTGFI 363


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 466 ACPTGSPTPSRTIS 425
           A PTG PTPS + S
Sbjct: 219 ATPTGIPTPSTSAS 232



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 12  PRTVASELPAASPSRSAQP 68
           PR+VA+     +PS SA P
Sbjct: 215 PRSVATPTGIPTPSTSASP 233


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 507 RPGRAHGRHEPELRHAL 557
           RPG     H P L HA+
Sbjct: 33  RPGLQGLHHSPHLNHAM 49


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,787
Number of Sequences: 336
Number of extensions: 2030
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)