Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10c16
         (352 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   1.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   1.6  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   1.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   1.6  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   2.8  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   4.8  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   4.8  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   8.5  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 111 IRC*CFSTRRDGGCGGRNISLYLVARKEGSPTARSSRRESA 233
           + C  +S R   G   R   +     K+G+PTA   R  +A
Sbjct: 194 VYCTRYSDRPSSGRSPRTRRVKKPGAKQGAPTAEEKRPRTA 234


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 179 QVKRNVPTATTAIAPSAK 126
           QVKRNVP  T    P A+
Sbjct: 201 QVKRNVPKPTVPKIPPAE 218


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 300 CTRKYYFANKIIFPLHYVLLL 238
           C++K +  N  IF L+ VLLL
Sbjct: 108 CSKKSFRMNFAIFNLYMVLLL 128


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 179 QVKRNVPTATTAIAPSAK 126
           QVKRNVP  T    P A+
Sbjct: 201 QVKRNVPKPTVPKIPPAE 218


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 208 AVGEPSFLATK*REMFRPPQPPS 140
           +V EP+   T   E  RPP  PS
Sbjct: 398 SVPEPTISTTPRPEWARPPSTPS 420


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -1

Query: 265 FSAALCSATIFADSRLE 215
           F  A+C+ T+FA  + E
Sbjct: 9   FILAICACTVFAQQQAE 25


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 291  KYYFANKIIFPLHYVLLLSSPIRALSSVRWG 199
            KY     +  P  Y+LL+   +  +++V WG
Sbjct: 1003 KYGVIYYVTVPSMYLLLVIYSVFNMNNVSWG 1033


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 291  KYYFANKIIFPLHYVLLLSSPIRALSSVRWG 199
            KY     +  P  Y+LL+   +  +++V WG
Sbjct: 1003 KYGVIYYVTVPSMYLLLVIYSVFNMNNVSWG 1033


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 179 QVKRNVPTAT 150
           QVKRNVP  T
Sbjct: 201 QVKRNVPKPT 210


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,540
Number of Sequences: 336
Number of extensions: 1728
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)