Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0066
         (537 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       27   0.079
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    23   2.3  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    23   2.3  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           23   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.0  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   5.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   5.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   6.9  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 27.5 bits (58), Expect = 0.079
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +3

Query: 27  SENICARNRGFNVDRVTGYYCNC 95
           S N C RN G  VDR+  + CNC
Sbjct: 111 SPNPC-RNNGSCVDRIADFECNC 132


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +2

Query: 143 RKPVKQYC*YFFYFNKRLFETEASLS------FKYEKKHGGSMKESRKPTRANI*WAQIS 304
           + P  QY  +  Y N      E S+S      + + K HG S     K TR      Q  
Sbjct: 137 KTPPNQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDSSATGNKRTRQTYTRYQTL 196

Query: 305 ELETE 319
           ELE E
Sbjct: 197 ELEKE 201



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 358 TKRKRIQIGKSLR 320
           T+R+RI+I +SLR
Sbjct: 209 TRRRRIEIAESLR 221


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +2

Query: 143 RKPVKQYC*YFFYFNKRLFETEASLS------FKYEKKHGGSMKESRKPTRANI*WAQIS 304
           + P  QY  +  Y N      E S+S      + + K HG S     K TR      Q  
Sbjct: 137 KTPPNQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDSSATGNKRTRQTYTRYQTL 196

Query: 305 ELETE 319
           ELE E
Sbjct: 197 ELEKE 201



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 358 TKRKRIQIGKSLR 320
           T+R+RI+I +SLR
Sbjct: 209 TRRRRIEIAESLR 221


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
 Frame = +2

Query: 143 RKPVKQYC*YFFYFNKRLFETEASLS------FKYEKKHGGSMKESRKPTRANI*WAQIS 304
           + P  QY  +  Y N      E S+S      + + K HG S     K TR      Q  
Sbjct: 137 KTPPNQYENFQQYDNNNFSAEENSVSEPPANFYPWMKAHGDSSATGNKRTRQTYTRYQTL 196

Query: 305 ELETE 319
           ELE E
Sbjct: 197 ELEKE 201



 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -3

Query: 358 TKRKRIQIGKSLR 320
           T+R+RI+I +SLR
Sbjct: 209 TRRRRIEIAESLR 221


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 242 GGSMKESRKPTRANI*WAQISELETETQTFSNLNSFSFCWKLK 370
           GG  +++R+  + ++   ++ ELE     F N +S S   K++
Sbjct: 585 GGRRRQTREKRKKSLPVRKLLELERAQHEFKNGDSSSLLDKMR 627


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 18  LNKSENICARNRGFNVDRVTGYYCNCLCN*MSFL 119
           +NK E  C      +V   TG+   C C   SFL
Sbjct: 56  VNKCEGSCKSQVQPSVITPTGFLKECYCCRESFL 89


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 48  NRGFNVDRVTGYYCNC 95
           N G  +D+V G+ C C
Sbjct: 271 NNGTCLDKVGGFECKC 286


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 314 TETQTFSNLNSFSF 355
           T+ QTFSNLN   F
Sbjct: 115 TKYQTFSNLNISGF 128


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,775
Number of Sequences: 336
Number of extensions: 1557
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)