Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0056
         (534 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   3.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   9.0  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = -1

Query: 291  PGGSFASATSMFNVPSEFKIADLL-----KKQSTNFLKAL 187
            PGGS  + +SMF+  S     D L     KK S++ L AL
Sbjct: 955  PGGSLGALSSMFDSLSGNNTGDALAPSGGKKGSSHPLAAL 994


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 306  KPKAY*NSARIRPGKT 353
            KPK Y  SA + P KT
Sbjct: 1552 KPKGYLLSAAVSPSKT 1567


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 192 ALSSEYCPVFAAFITSVLTPDSLTHSE 112
           AL  +Y P   AF+ +   PDS+   E
Sbjct: 191 ALKIKYNPFAKAFLDAKERPDSIYQRE 217


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,968
Number of Sequences: 336
Number of extensions: 2278
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12992348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)