Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0177
(354 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 41 4e-06
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 41 4e-06
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 41 4e-06
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 39 2e-05
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 39 2e-05
AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine recombi... 24 0.53
DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein. 21 2.8
AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory recept... 21 3.7
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 20 8.6
AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase prot... 20 8.6
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 40.7 bits (91), Expect = 4e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 315
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 40.7 bits (91), Expect = 4e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 315
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 40.7 bits (91), Expect = 4e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 NIRESESTVRIQADLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA 315
++ E + A L + W D L WN E+ G ++ +LW+PDV++ N+A
Sbjct: 42 DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 38.7 bits (86), Expect = 2e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 315
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 38.7 bits (86), Expect = 2e-05
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 196 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 315
L + W D L WN E+G L ++ +LW+PDV++ N+A
Sbjct: 56 LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSA 96
>AY531876-2|AAT08871.1| 340|Tribolium castaneum tyrosine
recombinase protein.
Length = 340
Score = 23.8 bits (49), Expect = 0.53
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = -2
Query: 158 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 12
+++ L C + T +L S GE+R ++ + S + S + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276
>DQ211693-1|ABB16909.1| 314|Tribolium castaneum dorsocross protein.
Length = 314
Score = 21.4 bits (43), Expect = 2.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 236 QGSGAAALGWCPRN 277
+ S A ALGW P N
Sbjct: 153 KASTAQALGWAPTN 166
>AM292348-1|CAL23160.2| 346|Tribolium castaneum gustatory receptor
candidate 27 protein.
Length = 346
Score = 21.0 bits (42), Expect = 3.7
Identities = 10/42 (23%), Positives = 17/42 (40%)
Frame = +1
Query: 1 FLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDSKIVV 126
F TC I +CE + +D ++ R+ KI +
Sbjct: 188 FFYTCLIQIETQCEIVSDTLRNLDKIVTNGFRNVAESRKIFI 229
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 18 YS*CGRMRKRNITVPHD 68
Y C R++KR TV D
Sbjct: 2603 YEICERVKKRGWTVTRD 2619
>AJ876407-1|CAI45288.1| 590|Tribolium castaneum phosphatase
protein.
Length = 590
Score = 19.8 bits (39), Expect = 8.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 74 ESIMRDSDVAFSHSAALAIAQV 9
+ + DSD+ +SA+ AIA +
Sbjct: 567 DKLTADSDIDVKYSASEAIAGI 588
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,549
Number of Sequences: 336
Number of extensions: 1795
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used: 7087595
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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