Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021114
         (695 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    23   1.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   7.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 259 LLALKECIRALGMKGNNHLPFRVSKLTQVLRDSFIGDKSRTCM 387
           +LA   C+RA  +KGN   P ++   ++V+ D    D+   C+
Sbjct: 9   VLAFFGCVRAQQLKGNQEDPCKLK--SKVVGDETYCDRYWECV 49


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 GAVPGHAPRAREVLAHRPGGQRARRRHLLRQPTDQNGKRG 246
           G    H P     + H PG    +  ++L++  + +GK G
Sbjct: 399 GGEVAHLPNTH--MGHEPGAAYYQNENMLQKNAEYSGKVG 436


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/40 (25%), Positives = 18/40 (45%)
 Frame = +1

Query: 127 GAVPGHAPRAREVLAHRPGGQRARRRHLLRQPTDQNGKRG 246
           G    H P     + H PG    +  ++L++  + +GK G
Sbjct: 347 GGEVAHLPNTH--MGHEPGAAYYQNENMLQKNAEYSGKVG 384


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 393 HDLAGHGLLRAQPQHAP 443
           HD AG+GL    P+  P
Sbjct: 193 HDAAGYGLRNYGPEPVP 209


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 319 RAGGCCPSCP 290
           R G CC +CP
Sbjct: 100 RPGRCCKTCP 109


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = +1

Query: 70  RPDVGQLQLVALARRVPDRGAVPGHAPRAREVLAHRPGGQR 192
           RPD   L L +     PD+        RARE     P G R
Sbjct: 134 RPDTQNLDLPSFIHVFPDKYVDSQVFARAREEAHIVPEGSR 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,048
Number of Sequences: 336
Number of extensions: 2400
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)