Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0112
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.24 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.43 
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    22   4.0  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   5.3  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.9  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 266 RPLKSQHFCLSYTASLKCSSVPSFLEAIFICPVYIL 373
           +PLK+ + C    ASL C  +  F+ A+F  P+ ++
Sbjct: 174 KPLKAGYICTKTRASLIC-LLAWFIAALFTSPMLVI 208


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 266 RPLKSQHFCLSYTASLKCSSVPSFLEAIFICPV 364
           +PLK+ + C    ASL C  +  F+ A+F  P+
Sbjct: 174 KPLKAGYICTKTRASLIC-LLAWFIAALFTSPI 205


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 339 KNDGTELHFSDAVYDKQKC 283
           KND    ++ D V DK KC
Sbjct: 33  KNDQMTRNYLDCVLDKGKC 51


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 448 TLEYTKPIYQYHTASKLC 501
           T  YT  +  YHT SK C
Sbjct: 56  TCRYTFLLEWYHTLSKAC 73


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 264 IDPSNRSIFVCHTLRH 311
           + P+ + +FV HT+ H
Sbjct: 119 LTPNGKIVFVSHTVEH 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,134
Number of Sequences: 336
Number of extensions: 3022
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)