Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0110
         (367 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          25   0.18 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   2.3  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 25.4 bits (53), Expect = 0.18
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 268 FQSFSVLQISGFGSPFMFHSGSECSLIKQSHS 363
           +Q+FS L ISGFG   +  SG    L  ++HS
Sbjct: 117 YQTFSNLNISGFGG--VQESGDIAGLRNKTHS 146


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 60  RSRPTHSARTGQIASTVRRPADG 128
           RSRP H      +++T ++  DG
Sbjct: 64  RSRPGHRKTDNSLSATSKKDKDG 86


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -1

Query: 94 CPVLAEWVGRDRGSLTSG 41
          CP   +W G + GS   G
Sbjct: 8  CPKRMKWEGGEEGSPEEG 25


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,780
Number of Sequences: 336
Number of extensions: 1613
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7510735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)