Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0073
         (592 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   1.9  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    22   3.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   7.8  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +1

Query: 163 DKQKGLCSGT---RR*TVFLNFVIVTYFGE 243
           DKQ GL   +   RR ++F+N  I+  FGE
Sbjct: 107 DKQFGLLGYSINYRRISIFVNLAILGVFGE 136


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 562 PMPIRW*PKSLFQLHRDG 509
           P+P+R+ P SLF  +R G
Sbjct: 467 PVPLRFDPGSLFVQNRGG 484


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 157 LSDKQKGLCSGTR 195
           LSD +K LC+G++
Sbjct: 297 LSDSEKTLCNGSK 309


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,412
Number of Sequences: 336
Number of extensions: 2756
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14830622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)