Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0062
         (509 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        30   0.014
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   2.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   3.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   3.7  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   6.4  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    21   8.4  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 29.9 bits (64), Expect = 0.014
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 233 QRPLDGKKSPPRELVTPPRDANTEPEWVRRSNEMQKGA----REVDSPPKYQQTSQPVWS 400
           +RP DG  S        P D+  EP  ++R  +         R V+   K Q+T QP   
Sbjct: 326 RRPSDGATSEALPFELLPLDS--EPGMLKRKRQKYHDPSQLLRHVEESDK-QRTHQPFLL 382

Query: 401 TRPSENRKSLPKDSASNVQGSRI 469
             PSE  K  P+D A +  G ++
Sbjct: 383 NIPSEGIKVEPRDKAPSPYGGQM 405


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 184 PRWYRLRTVGTVI 146
           PRWY   T+G +I
Sbjct: 38  PRWYICYTIGVII 50


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 260 PPRELVTPPRDANTE 304
           PP E +TP +DA+++
Sbjct: 104 PPEERLTPSKDASSK 118


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 362 PPKYQQTSQPVWSTRPSE 415
           PP YQ ++QP  S  P++
Sbjct: 331 PPPYQISAQPTPSQSPNQ 348



 Score = 21.4 bits (43), Expect = 4.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 233 QRPLDGKKSPPRELVTPP 286
           QRP     SPP  +  PP
Sbjct: 271 QRPKSASLSPPPHVYNPP 288


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 359 CRPHVRPFAFHYS 321
           CR  V P+ F+Y+
Sbjct: 114 CRDRVNPYLFYYA 126


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.6 bits (41), Expect = 8.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 408 LRKIAKVCPKIVLLTFREVELF 473
           +RK+ K    IVLLTF    LF
Sbjct: 278 VRKVDKEIAYIVLLTFASDLLF 299


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,548
Number of Sequences: 336
Number of extensions: 2850
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12154132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)