Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0047
         (698 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.59 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.59 
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       23   1.8  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   1.8  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   4.2  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    22   5.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   5.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 405 QRQSSCSWLYFSKQSRADSSDKLMRHHK 322
           +R S C ++YF    R  ++D+L  H K
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSK 695


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 405 QRQSSCSWLYFSKQSRADSSDKLMRHHK 322
           +R S C ++YF    R  ++D+L  H K
Sbjct: 668 KRWSQCMYMYFLLGFRLQANDELSAHSK 695


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 142 NFEDRVTMWVYEEIIEGKKLTEIINETHENVKYLPGHKLPSNVVAVP 282
           N +  VT+   E+ +  K        TH+  K++P +  P  ++A P
Sbjct: 392 NQKGEVTVLEIEDWVLLKNKVTSDTRTHQFAKFMPLYSGPYKIIAKP 438


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 590 ISYRQTTSGSWWWTMRTQSKYVER 661
           +S R++ SG W+W   T  +   R
Sbjct: 20  VSSRKSDSGIWYWQCNTDEETCTR 43


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 197 FFPSIISSYTHIVTLSSKFDRL 132
           FF +   SY HI T S++F R+
Sbjct: 128 FFVNEKQSYFHIATTSNEFIRV 149


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 405 QRQSSCSWLYFSKQSRADSSDKLMRHHK 322
           +R S C ++YF    R   +D+L  H K
Sbjct: 121 KRWSQCMYMYFLLGFRYLVNDELSAHSK 148


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 405 QRQSSCSWLYFSKQSRADSSDKLMRHHK 322
           +R S C ++YF    R   +D+L  H K
Sbjct: 435 KRWSQCMYMYFLLGFRYLVNDELSAHSK 462


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 37   NSCLVPNSCSPG 2
            N  LVP +C+PG
Sbjct: 1226 NGHLVPQNCAPG 1237


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,403
Number of Sequences: 336
Number of extensions: 3411
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)