Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0042
         (631 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    29   0.042
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    26   0.23 
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   8.5  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 28.7 bits (61), Expect = 0.042
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 185 SNNAFRFEGWGSRCSYTEILELISRGGWRI 274
           + N+ ++ G      Y EI+EL   GGW++
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKV 313


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +2

Query: 125 IYIQSTTLVN-SNLR*LEPLYSN-NAFRFEGWGSRCSYTEILELISRGGW 268
           +Y +S TL + SN +   P+ +  +A R+ G      Y EI+E  + GGW
Sbjct: 266 VYGRSFTLASASNNKLGAPIVAGGDAGRYTGERGMMGYNEIVEAQNAGGW 315


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 151 NESRRLYIYIFLDIKS 104
           N S+R YIY +LD K+
Sbjct: 458 NLSKRPYIYKYLDKKN 473


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,466
Number of Sequences: 336
Number of extensions: 3210
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)