Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0039
         (676 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.99 
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.3  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   7.0  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   7.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   7.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   9.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.2  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -2

Query: 669 CLSHSSRTPPQYA-SGTPNHSQSPGPI 592
           C S +S  PP Y  S  P  SQSP  I
Sbjct: 323 CWSLTSSPPPPYQISAQPTPSQSPNQI 349


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 464 ANMLSHVGHVILGMN 508
           AN+ +HV +  LG+N
Sbjct: 47  ANLCTHVNYAFLGLN 61


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 329 GPAKRRRAARMLRFGTNV 382
           GP KR R A + R G N+
Sbjct: 285 GPRKRLRFAYVTRTGANI 302


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 373 HQRRPLRRTQVAPAARGAPE 432
           HQ     + + APA+R APE
Sbjct: 250 HQPATKSKPRPAPASRNAPE 269


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 364 PLRHQRRPLRRTQVAPAARGAPEASC 441
           PL+ +RR + R Q        PE +C
Sbjct: 69  PLQKKRRIVARVQCRSIKNECPEPTC 94


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 464 ANMLSHVGHVILGMNT 511
           AN+ +HV +  LG+N+
Sbjct: 50  ANLCTHVHYAFLGVNS 65


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 443 TQEASGAPRAAGATCVRLRGLRW 375
           T    G PR+A  T ++L G +W
Sbjct: 686 TGSKPGKPRSAFLTDLKLMGGKW 708


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,155
Number of Sequences: 336
Number of extensions: 2505
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)