Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP01_F_D08
         (1013 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    30   0.025
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   4.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.5  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 30.3 bits (65), Expect = 0.025
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 233 RASCHIRVGSWIHTHRHRIQIWNRGPSGKGPDQEI 337
           R  CHI + S+ +T R     WN GP+  G   E+
Sbjct: 178 RQLCHIEIESFGYTMRDIRYKWNEGPNSVGVSSEV 212


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 248 IRVGSWIHTHRHRIQIWNRGPSGKGPDQEI 337
           I + S+ +T R     WN GP+  G   E+
Sbjct: 1   IEIESFGYTMRDIRYKWNEGPNSVGVSNEV 30


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 315 PLGPRFHICMRCLCVCIQLPTRI 247
           P+G  +  CM+C CV +Q   RI
Sbjct: 56  PIGVLY--CMKCECVPLQKKRRI 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,983
Number of Sequences: 336
Number of extensions: 3840
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 28764063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)