Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_D13
         (793 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.2  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   8.5  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  SAASAIPSLVNAFSSSKPPQTDNPSAR 135
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 307 SIWFRCQ*DRSTGVEKG*SNVEETVPG 227
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 307 SIWFRCQ*DRSTGVEKG*SNVEETVPG 227
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 714 RGGEKXXXGPFKKXGGFNPRGKSFXXGVQGFXEM 613
           R GEK    PF+K     P  + +   + G  E+
Sbjct: 202 RNGEKHHSFPFRKTTEIPPEPEDYVEDLVGHIEV 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,601
Number of Sequences: 336
Number of extensions: 2006
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)