Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C24
         (985 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    35   0.001
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    35   0.001
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    35   0.001
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    33   0.004
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    33   0.004
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    24   2.1  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 195 NIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
           ++ E    +   A L + W D  L WN  E+G      +  N  W PD ++  S
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 195 NIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
           ++ E    +   A L + W D  L WN  E+G      +  N  W PD ++  S
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 34.7 bits (76), Expect = 0.001
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +3

Query: 195 NIRESESTVRIQADLQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
           ++ E    +   A L + W D  L WN  E+G      +  N  W PD ++  S
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 237 LQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
           L + W D  L WN  E+G      +  N  W PD ++  S
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 237 LQMNWIDXRLSWNAXEWGXSTLAGVLGNAXWTPDXVLLXS 356
           L + W D  L WN  E+G      +  N  W PD ++  S
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNS 95


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = -1

Query: 199 MLACLKCRVRLTTILESGGESRSYVARSESIMRDSDVAFSHSAALAIAQ 53
           +++ L C +  T +L S GE+R ++   +     S  + S    + +A+
Sbjct: 228 VVSTLSCYLERTELLRSSGETRLFLTHRKPFHPASTQSLSRWIKMVLAE 276


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,794
Number of Sequences: 336
Number of extensions: 1463
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27926910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)