Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C10
         (874 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     23   3.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   4.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.2  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   9.6  

>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 338 ISPRPGTSTDGDEAQDTLVTKQGIQTDLLDGDGTVDPRSVD 460
           +SPR G+ TD     +   +  G    L D D   DP   D
Sbjct: 200 LSPRNGSPTDHSPVLNLSKSGGGSAGSLEDDDNISDPEDDD 240


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 639 HTATPISASRNTRSCQLRDTTGTLVFQNSLRVSEA 535
           H+A P +ASR T+S +      +    + LR S A
Sbjct: 119 HSAAPRTASRETKSSESDSGASSADPDDELRSSSA 153


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -2

Query: 714  PGEQPARVQEPEPLGRHRVPQRARNHTATPISASRNTR 601
            PG +P+     +P      P    NH  T  + S  TR
Sbjct: 1157 PGHKPSTSSWQKPTKPSYRPPSTTNHWQTKTTTSTTTR 1194


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 619 GEPEHQVVPVAGHHRHLS 566
           G   HQ   VAGHH   S
Sbjct: 12  GSHHHQSGSVAGHHHEQS 29


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,832
Number of Sequences: 336
Number of extensions: 3507
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24099889
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)