Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C06
         (895 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone recepto...    25   0.80 
AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochr...    23   4.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   4.3  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    22   5.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.9  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   9.9  

>AM295016-1|CAL25731.1|   96|Tribolium castaneum ecdysone receptor
           (isoform B) protein.
          Length = 96

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +2

Query: 242 RREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFE-REVDLSAWTL 376
           +R W +       ++ VTSS ALV +        +  +VDL  W L
Sbjct: 2   KRRWSARVAPEESSSEVTSSSALVMSPANSLASTDIGDVDLEFWDL 47


>AF264720-1|AAF75272.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenaseCYP4Q1 protein.
          Length = 126

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 536 ISNNLVDDVRIELGDPAPKRSHNELAPL 619
           +  ++V ++R  LGD + K S+N+L  L
Sbjct: 18  VQESIVAEMREVLGDLSKKPSYNDLQNL 45


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 675 LPSNSAIFSPAVLPV 631
           LP+N A F P +LP+
Sbjct: 50  LPTNPAFFHPGLLPL 64


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 238 VRCIYVLRIMSIGGRYNI--SCQHGTLT 161
           VRC+  L   ++GG  NI   C   T T
Sbjct: 327 VRCVLSLHCAAVGGSANIMSGCSTSTST 354


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -2

Query: 405 VGVSGSVCFIKVHADKSTSLSNCV*YLPSVQTRACDDV 292
           VG +G VC +++ + K  +L   V          C+D+
Sbjct: 127 VGWTGKVCDVEMVSCKDAALRKVVPLKKLCNNGTCEDI 164


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +2

Query: 545 NLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAELDGRW 679
           +L D++  E G      SHN L  L +      + + ++ELD  W
Sbjct: 334 SLPDNLFRETGLERLDVSHNLLGKLPLTSLSLASAQTLSELDLSW 378


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,535
Number of Sequences: 336
Number of extensions: 4128
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24823920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)