Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_C03
         (856 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    24   1.8  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   4.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   4.1  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   4.1  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   4.1  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   4.1  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   4.1  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   5.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   5.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   5.4  

>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 778 RIWFRNDRKSRHRRIKKQ 725
           +IWF+N R    +++KK+
Sbjct: 201 KIWFQNRRAKERKQVKKR 218


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 292 SSLKNHYFHCFITYSVGRK 348
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 367 YYRPRTASAQPSK 329
           YYRPRT+  +P +
Sbjct: 232 YYRPRTSRTEPPR 244


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 778 RIWFRNDRKSRHRRIKK 728
           +IWF+N R  + +R+K+
Sbjct: 298 KIWFQNRRMKQKKRMKE 314


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -1

Query: 778 RIWFRNDRKSRHRRIKKQRRYER 710
           +IWF+N R+++ R+  K+R  E+
Sbjct: 202 KIWFQN-RRAKERKQNKKRIEEK 223


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 778 RIWFRNDRKSRHRRIKK 728
           +IWF+N R  + +R+K+
Sbjct: 87  KIWFQNRRMKQKKRMKE 103


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 778 RIWFRNDRKSRHRRIKK 728
           +IWF+N R  + +R+K+
Sbjct: 87  KIWFQNRRMKQKKRMKE 103


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 178 ERAWENQRGKKTLXELDSSLAL*GDMRGV 264
           +R WE   G++ L +  + L   G  RGV
Sbjct: 43  DRYWECVNGQQELYDCPNGLVFAGKNRGV 71


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 ALFFDRCTAPVKLPAWQC 465
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -3

Query: 518 ALFFDRCTAPVKLPAWQC 465
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,056
Number of Sequences: 336
Number of extensions: 4062
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)