Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B24
         (890 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    26   0.46 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    26   0.46 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    24   1.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    24   1.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   2.4  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   2.4  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   2.4  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    23   3.2  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    23   3.2  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   5.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   5.6  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    22   5.6  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    22   5.6  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    22   5.6  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           22   5.6  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    22   5.6  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    22   7.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.8  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 624 WKWMLSLGWLVYGIGDLMI 568
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 25.8 bits (54), Expect = 0.46
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 624 WKWMLSLGWLVYGIGDLMI 568
           +KW+  L W  YG G LMI
Sbjct: 585 FKWLSFLSWFRYGNGALMI 603


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 46  SAASAIPSLVNAFSSSKPPQTDNPSAR 126
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 SIWFRCQ*DRSTGVEKG*SNVEETVPG 218
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 298 SIWFRCQ*DRSTGVEKG*SNVEETVPG 218
           ++W  CQ   + GVE+G       +PG
Sbjct: 147 TVWSHCQCVLADGVERGILTANRMIPG 173


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 323 RTSPPS*KATATRILSILRLSFFLPPLASK 412
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 323 RTSPPS*KATATRILSILRLSFFLPPLASK 412
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 323 RTSPPS*KATATRILSILRLSFFLPPLASK 412
           R+SP +  A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 831 LEEGNRVCVNDX**GXKLVIHHSLENK 751
           L+ G   C      G + VIHH +ENK
Sbjct: 68  LQNGCAKCNEKHKEGVRKVIHHLIENK 94


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 831 LEEGNRVCVNDX**GXKLVIHHSLENK 751
           L+ G   C      G + VIHH +ENK
Sbjct: 68  LQNGCAKCNEKHKEGVRKVIHHLIENK 94


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +1

Query: 253 FQRLYFDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 387
           F  L  +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 689 RLHQRISPPSSLDMAKGGSPPLFS 760
           RL  R   P S  +  GG+PPL S
Sbjct: 182 RLSARPLLPPSFGIFPGGAPPLVS 205


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 151 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 185


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASRLIXRHSR 809
           S+PP+ + W+K V      VN   +  R    ++R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKRQRTSYTR 229


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +3

Query: 705 SHPPRHWTWLKGVRPPYFQVNDESQASR 788
           S+PP+ + W+K V      VN   +  R
Sbjct: 195 SNPPQIYPWMKRVHLGQSTVNANGETKR 222


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/44 (27%), Positives = 15/44 (34%)
 Frame = +1

Query: 553 WLHQPDHQIPDSIHQPPQT*HPFPSIP*TPYXKEFAPGLKPPLS 684
           WL  P   +P     P    HP+  I    Y    + G   P S
Sbjct: 106 WLSSPSGNVPPLTPSPGPPSHPYTVIS-NGYSSPMSSGSYDPYS 148


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,073
Number of Sequences: 336
Number of extensions: 4330
Number of successful extensions: 21
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24720487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)