Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B23
         (920 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    56   4e-10
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    54   1e-09
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    54   2e-09
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    52   6e-09
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    52   6e-09
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    44   2e-06
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    26   0.36 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   0.83 
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    22   7.7  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 56.0 bits (129), Expect = 4e-10
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
 Frame = +1

Query: 169 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEWGCSTWL-VSS 345
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+G    L ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 346 ERLWRPDVVLLNAAATTA-GDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 522
            +LW+PDV++ N+A     G +     V +NGS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 523 TFKFGS 540
             KFGS
Sbjct: 143 DMKFGS 148


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 54.4 bits (125), Expect = 1e-09
 Identities = 36/126 (28%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
 Frame = +1

Query: 169 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 345
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 346 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 522
            +LW+PDV++ N+A     G +     V +NGS  ++      +   + +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHNGSCLYVPPGIFKSTCKIDITWFPFDDQHC 142

Query: 523 TFKFGS 540
             KFGS
Sbjct: 143 DMKFGS 148


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 53.6 bits (123), Expect = 2e-09
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
 Frame = +1

Query: 169 ESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGEW-GCSTWLVSS 345
           ES P  ++   LTL  +  ++ E    +   A L + W D  L WN  E+ G     ++ 
Sbjct: 25  ESEP-LEVKFGLTLQ-QIIDVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVKDLRITP 82

Query: 346 ERLWRPDVVLLNAA-ATTAGDYALRARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTC 522
            +LW+PDV++ N+A     G +     V + GS  ++      +   M +  +P D Q C
Sbjct: 83  NKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGSCLYVPPGIFKSTCKMDITWFPFDDQHC 142

Query: 523 TFKFGS 540
             KFGS
Sbjct: 143 DMKFGS 148


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 52.0 bits (119), Expect = 6e-09
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 268 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 441
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 442 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 540
             ++      +   M +  +P D Q C  KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 52.0 bits (119), Expect = 6e-09
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
 Frame = +1

Query: 268 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGDYALRARVSNNGS 441
           L + W D  L WN  E+G    L ++  +LW+PDV++ N+A     G +     V + GS
Sbjct: 56  LSLEWNDYNLKWNESEYGGVKDLRITPNKLWKPDVLMYNSADEGFDGTFQTNVVVKHGGS 115

Query: 442 VSWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 540
             ++      +   M +  +P D Q C  KFGS
Sbjct: 116 CLYVPPGIFKSTCKMDITWFPFDDQHCDMKFGS 148


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 44.0 bits (99), Expect = 2e-06
 Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
 Frame = +1

Query: 124 SLSLMIDSLLATYDRESPPD---SKIVVNLTLH-LRHANIRESESTVRILADLQMNWIDK 291
           ++S ++DS   +YD+   P+     + V +T++ L  +++ E +    +    +  W D 
Sbjct: 40  NISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDP 99

Query: 292 RLSWNAGEWGCSTWLVSSE---RLWRPDVVLLNAA------ATTAGDYALRARVSNNGSV 444
           RL++     G  T  V SE    +W PD   +N        ATT+ ++    RV ++GS+
Sbjct: 100 RLAYGKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFI---RVHHSGSI 155

Query: 445 SWIKRLDISTPISMQLDNWPNDMQTCTFKFGS 540
           +   RL I+    M L   P D Q C  +  S
Sbjct: 156 TRSIRLTITASCPMNLQYLPMDRQLCHIEIES 187


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 409 ALRARVSNNGSVSWIKRLDISTPISMQLDNWPND 510
           A+   +  N + SW + ++  + + M LDNW ND
Sbjct: 272 AIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKND 305


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 19/73 (26%), Positives = 29/73 (39%)
 Frame = -1

Query: 248 VDSDSRMLACLKCRVRLTTILESGGDSRSYVARSESIMRDSDVAFSHSAALAIAQVRRNG 69
           V S+S       CR     I +    ++  V+    + +DS  AF+      +AQV    
Sbjct: 56  VSSNSYTPKIKSCRPFKAYIKDPLTLAQGLVSTEMLLKKDSSEAFNEFRTKILAQVHGTN 115

Query: 68  NKNNISRRHFMTT 30
           N  N + R   TT
Sbjct: 116 NGTNKNMRRLSTT 128


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -3

Query: 456 LYPG-DGAVIRYTGAESVVPGGGC 388
           LY G DG+VI     E VV G GC
Sbjct: 348 LYLGSDGSVILKNYKEMVVVGCGC 371


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,523
Number of Sequences: 336
Number of extensions: 3395
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25754817
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)