Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP01_FL5_B21
         (852 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   1.8  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    22   7.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.4  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.4  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.4  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.4  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.4  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.4  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.4  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   9.4  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.4  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 368 TCTNAGTRTNRASPAP 415
           TCT    + NRASP P
Sbjct: 254 TCTRTTLKNNRASPYP 269


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
          kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 37 RARSAAAPGYGPQCDAWS 90
          R +++++ G G +CD WS
Sbjct: 40 RKQNSSSCGNGNRCDLWS 57


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/29 (34%), Positives = 11/29 (37%)
 Frame = +2

Query: 302 CWPTWESTPKNLSSNYPT*PRRTCTNAGT 388
           C P WE T  + S N        C N  T
Sbjct: 170 CPPDWEGTTLSQSPNRRRASSNPCHNGAT 198


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 1   YWLPYAAPEVLARARSAAAPGYGPQ 75
           Y  P  AP+      +A APG+G Q
Sbjct: 43  YSPPQVAPQYPQHPYAAPAPGHGLQ 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.316    0.133    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,021
Number of Sequences: 336
Number of extensions: 3101
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23555563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)