Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40078
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ...    60   4e-10
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    43   5e-05
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    42   9e-05
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    35   0.010
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit...    35   0.014
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    34   0.024
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.91 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   8.5  

>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
           Cct4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 527

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 27/64 (42%), Positives = 38/64 (59%)
 Frame = -3

Query: 543 FTANKFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCA 364
           F  +K       EE +  G K +K +G    G+TVS+L RG++   + EA RSLHDALC 
Sbjct: 340 FAEDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCV 399

Query: 363 VRCV 352
           +RC+
Sbjct: 400 IRCL 403



 Score = 52.0 bits (119), Expect = 9e-08
 Identities = 24/32 (75%), Positives = 28/32 (87%)
 Frame = -2

Query: 250 CLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
           C+RA S+ALE+IP TLAENAGLN I+ VTELR
Sbjct: 438 CIRAFSEALEIIPVTLAENAGLNAIQVVTELR 469


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 42.7 bits (96), Expect = 5e-05
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = -2

Query: 244 RA*SDALEVIPSTLAENAGLNPIETVTELR 155
           RA +DA+E+IP TL +N G NPI+ +TELR
Sbjct: 436 RAVADAIEIIPRTLVQNCGANPIKALTELR 465



 Score = 31.9 bits (69), Expect = 0.098
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 480 YIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAVRCV 352
           Y  +TGC +  +  ++L+RG S  ++ E  R+L DA+   R V
Sbjct: 358 YTFLTGC-KNPKACTILLRGPSKDIINEVERNLQDAMAVARNV 399


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 19/30 (63%), Positives = 23/30 (76%)
 Frame = -3

Query: 447 RTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
           R V+V VRGS+  +V EA R+LHDALC VR
Sbjct: 383 RAVTVFVRGSNKMIVDEAKRALHDALCVVR 412



 Score = 35.9 bits (79), Expect = 0.006
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = -2

Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTELR 155
           Y + A +DAL+ IP  LAEN+GL+ IE +T ++
Sbjct: 448 YSMGAFADALDTIPLALAENSGLSSIEALTAVK 480



 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 92  DMRTEHVLQPLHVTASALALATETVRAILK 3
           DMR + V+ PL      L LAT+  R +LK
Sbjct: 502 DMRKQFVIDPLIGKKQQLLLATQLCRMVLK 531


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = -3

Query: 507 EEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDALCAVR 358
           EE    G ++    GC +  +T ++++RG +   +AE  RSLHDA+  V+
Sbjct: 354 EERQIGGDRFNLFEGCPKA-KTCTLILRGGADQFIAEVERSLHDAIMIVK 402



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 229 ALEVIPSTLAENAGLNPIETVTELR 155
           +LEVIP  L +NAG +    + +LR
Sbjct: 446 SLEVIPRQLCDNAGFDSTNILNKLR 470


>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
           Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 546

 Score = 34.7 bits (76), Expect = 0.014
 Identities = 12/32 (37%), Positives = 24/32 (75%)
 Frame = -2

Query: 253 YCLRA*SDALEVIPSTLAENAGLNPIETVTEL 158
           + ++   +A EV+P T++ENAGL+P + +++L
Sbjct: 436 HAIKQYGEAFEVVPRTISENAGLDPTDVISKL 467


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = -3

Query: 552 WNHFTANKFSQC*FGEEINEPGGKYIKMTGCGQGGRTVSVLVRGSSGAVVAEAARSLHDA 373
           ++H    K   C   EEI     K IK +G  + G   ++++RG++  ++ E+ R++HDA
Sbjct: 331 FDHPELVKLGHCKKIEEIIIGEDKMIKFSGV-EAGEACTIVLRGATHQLLDESERAIHDA 389

Query: 372 LCAV 361
           L  +
Sbjct: 390 LAVL 393


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = +1

Query: 385 RSRCLCHHGATRSANQYAHCATALTATRHLYIFSTRFIYFFTKSTLTKFVSCKMIPKKQL 564
           + R  C + A  S    A     ++  R L+ ++T+ ++F T  TL   +   ++  K +
Sbjct: 169 QQRVACSNVAGMSPGATAELNGEVSPDRRLFEYNTKRVFFMTPQTLQNDLKEHLLDAKSI 228

Query: 565 GCIL 576
            C++
Sbjct: 229 ICLI 232


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 IYFPPGSFISSPNQH 520
           +  PP S++SSPNQ+
Sbjct: 265 VLMPPASYLSSPNQY 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,714,530
Number of Sequences: 5004
Number of extensions: 51056
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)