Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40075
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    29   1.1  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   4.5  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   7.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   7.9  

>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +2

Query: 245 CGSKEDEDEEINGDD 289
           CGSKE EDEE++ D+
Sbjct: 43  CGSKETEDEEVDSDE 57


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 431 FDLFCWLSLVCFYFH*ELMLSNKQLFQNRSTYFSTE 324
           F   CW+ L    FH  + ++N   F    T FS E
Sbjct: 121 FPFLCWICLWSMIFHFIIAIANGVYFVKHITKFSCE 156


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/82 (28%), Positives = 39/82 (47%)
 Frame = -2

Query: 693 RHYNFLLHFVRTHSTPRAHNPTFLFVT*AFTQMGIEPTTFDMAVKPA*LMHSKVSYSTYR 514
           +H  +L+H   +   PR    T + V   F    I P +F M   P  ++  K   +   
Sbjct: 119 QHERYLIHDQNSLRVPR--KDTRVHVCLYF----ITPVSFGML--PLDVLAMKELSTHVN 170

Query: 513 LVKLISESESFTIPLPLHVKQK 448
           LV +I+++++FT P    +KQK
Sbjct: 171 LVPVIAKADTFTTPELTQIKQK 192


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 672 HFVRTHSTPRAHNPTFLFVT*AFTQMGIEPTTFDMAVKPA 553
           HF  +HS   AHN + L      +Q    P TF++A +P+
Sbjct: 71  HFQSSHSVSNAHNQSPL----NQSQSSANPVTFEIADEPS 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,484,746
Number of Sequences: 5004
Number of extensions: 74022
Number of successful extensions: 182
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)