Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40064
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    28   0.80 
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    27   2.4  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   5.6  
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc...    25   7.4  
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz...    25   7.4  
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo...    25   7.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   9.8  
SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   9.8  

>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 487 KASKHMSYYNGVHK*YFYRTFNLTKHSLNGSFVSLCWVQRKE 362
           K SK M  +  +H   FY  F+   H+L  +   LC +  KE
Sbjct: 255 KDSKKMDVHKQLHSSLFYARFSAVGHNLCPTITELCKLCSKE 296


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 326 HVPRFMY-CNGMDFFSLNPAEGYEATVKTVLGQV 424
           HVP  +  CN  D F+  PAE  +  +K  L  +
Sbjct: 139 HVPHLLIACNKFDLFTAQPAEKIQQLLKAELHNI 172


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -2

Query: 493  FSKASKHMSYYNGVHK*YFYRTF--NLTKHSLNGSFVSLCWVQRK------EIHTVTVHE 338
            F++  K     + + K  FY  F  N+     N   +S+  V ++      EI  VT+ E
Sbjct: 879  FTRLEKQAEIVSTITKDEFYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVTIIE 938

Query: 337  PGNMYKCE*TLPDRVGRCAFPL 272
             GNM+K   TL     + AFPL
Sbjct: 939  NGNMFKESMTL----SKAAFPL 956


>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1333

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 368 SLNPAEGYEATVKTVLGQVKSSIEVLFMYAIII 466
           S+ PA  ++  + T+LG+VK S  V +M  I+I
Sbjct: 539 SIAPAH-FQYFINTILGEVKESHVVCYMDNILI 570


>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
           element|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1333

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 368 SLNPAEGYEATVKTVLGQVKSSIEVLFMYAIII 466
           S+ PA  ++  + T+LG+VK S  V +M  I+I
Sbjct: 539 SIAPAH-FQYFINTILGEVKESHVVCYMDNILI 570


>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
           element|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1333

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 368 SLNPAEGYEATVKTVLGQVKSSIEVLFMYAIII 466
           S+ PA  ++  + T+LG+VK S  V +M  I+I
Sbjct: 539 SIAPAH-FQYFINTILGEVKESHVVCYMDNILI 570


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 474 CFEALLKLYIYFCILY 521
           C  A+  L+IYFC++Y
Sbjct: 738 CGVAIAGLFIYFCVVY 753


>SPAC23A1.02c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 430

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +3

Query: 213 KNTMISIE*LIARVLGRRWFNGNAHRPTRSGRVYSHLYMFPGSCTVTVW 359
           KNT   +  LI +++G+RW   +  +   S  +Y+   +  G  +   W
Sbjct: 360 KNTPSVVTFLIQKLIGQRWKKASLKQSKFSSDIYATYTLSHGGPSYIWW 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,132,341
Number of Sequences: 5004
Number of extensions: 41122
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)