Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40050
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    92   8e-20
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    28   1.5  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   2.7  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    27   2.7  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    27   4.7  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    27   4.7  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    26   6.1  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    26   6.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   8.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   8.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   8.1  

>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 92.3 bits (219), Expect = 8e-20
 Identities = 38/77 (49%), Positives = 53/77 (68%)
 Frame = +2

Query: 257 DIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCILFEGRKMRDLYMWISNIPNGPSA 436
           D+  +MPH K +SK++    LY +NE++E+ NCN    FE R+  DLY+ I+  PNGP+ 
Sbjct: 63  DLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTV 122

Query: 437 KFLVENIYTMGELKMTG 487
           KF VEN++TM EL MTG
Sbjct: 123 KFHVENLHTMDELNMTG 139



 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 66/238 (27%), Positives = 98/238 (41%), Gaps = 6/238 (2%)
 Frame = +3

Query: 87  KVKQRITEPVTKDENVPLPPVRMSSDPAPKQVKWINRQRVLVFAMRGINHRHRHLMKILR 266
           K+K     P  +DE+    PV+              +Q+VLV + RG+ +R RHL+  L 
Sbjct: 6   KLKTSERAPKNEDEDEEYVPVQNGQGNKHSAGFVPIKQKVLVLSSRGVTYRQRHLLNDLV 65

Query: 267 N*CHIIRQSPKWREAKTCMLLMKLAR*KTATNAFYLKEER*GIYICGYLIYPMDQVLNFW 446
           +     ++  K         L +LA      N F+ +  R           P    + F 
Sbjct: 66  SMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFFFESRRREDLYLHIARAPNGPTVKFH 125

Query: 447 WKTFILWGN*K*LA-LFERI*ALLSFDPQFTKDPHYCLLKELLVQIFGVPNYHPKSQPFF 623
            +               +    +LSFD  F   PH  ++KELL Q FG+P    +S+PF 
Sbjct: 126 VENLHTMDELNMTGNALKGSRPILSFDKTFDTAPHLKVVKELLQQTFGIPKGARRSKPFI 185

Query: 624 DHVYTLMVLVTEFGFRNYQI-----LSGRWVL*LK*GPRFVLNPVQIFSRIVGGCPIY 782
           D V TL +   +  FRNY+I      S   V  ++ GPRFV+  + I     GG  IY
Sbjct: 186 DRVCTLTIADGKIWFRNYEIRENEDKSKDPVTLIEIGPRFVMTIINILEGSFGGPVIY 243


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -2

Query: 423 LGILDIHIYKSLIFLPSNKMHLLQFFISLISLTTYKFLLL 304
           +GIL   +YK  + L + +M L  FF S++ + T+  +++
Sbjct: 133 MGILPFTMYKYTVILTALEMPLAIFFCSIVCVCTFSPIMI 172


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 365 ILFEGRKMRDLYMWISNIPNGPSAKFLVENIYTMGELKMTG 487
           +L E RK  +  + + ++PNGPS  F + N+ T  E+   G
Sbjct: 150 VLNEDRKKTNA-LTLVHLPNGPSFYFTLSNLQTAKEISNHG 189


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = -1

Query: 544 GSFVNCGSKDNKA*ILSNNASHFQFPHSINVFHQKFSTWSIGYIRYPHI 398
           GSF+      +       N   F  P+SIN  H  F   S+GY  YP I
Sbjct: 522 GSFIKVYKNGSYMGTAFENLLDFNPPNSINSNHYSFDDGSLGY--YPSI 568


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
            |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 754  ENIWTGFNTNRGPYFS*STHLPDRI 680
            E IW G + N+ PY S S HL   I
Sbjct: 993  EAIWKGHSENKIPYTSLSNHLSTEI 1017


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = -3

Query: 866 KLGTRAFPRNKPCPKVWPGT*WNLGISPINGAPTNDPGEY 747
           K G RAF  NK  P V+  T W  G S I+   TN    Y
Sbjct: 107 KSGFRAFIENKYSPLVFHATSWTNGFS-IDVQKTNPISSY 145


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 525  DRKITKPRSSQTMPVIFSSPIV*MFSTKNLA 433
            D ++ K R  + +PV+ S P+V +F+  N A
Sbjct: 1428 DEELIKARRKRALPVVPSKPVVEVFNDLNEA 1458


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 555 LLKELLVQIFGVPNYHPKSQPFFDHVYTLMVLV 653
           L+ +LL  I G+   HPKSQ  F+   TL + +
Sbjct: 90  LIDDLLHVIEGLVLIHPKSQTLFEDKATLRLFI 122


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 800 NLGISPINGAPTNDP 756
           N   SP NGAPTN P
Sbjct: 239 NTNTSPANGAPTNKP 253


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +2

Query: 191 KQTEGTRLCDERYQSSSQAFNEDIKKLMPHHKTESKMERSKNLYVVNEISEMKNCNKCIL 370
           K  E  RL +ER  ++ QA  +DI   +   K++     S+N  ++NE+ +M+N  + + 
Sbjct: 232 KDHEILRLKEER-TAAMQAI-DDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLE 289

Query: 371 FEGRKMRDLYMWISN 415
            E     D Y  I N
Sbjct: 290 QELYAFEDDYSRIQN 304


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -1

Query: 820 FGQGPNGI*GFPP*MG--HP-PTILENIWTGFNTNRGPY 713
           FGQ PN     P   G  HP PT L+   TG+  N  PY
Sbjct: 496 FGQTPNAPMMAPNHTGYVHPQPTGLQRQTTGYTGNNNPY 534


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,063,643
Number of Sequences: 5004
Number of extensions: 97063
Number of successful extensions: 258
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)