Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40048
         (248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    29   0.12 
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   1.1  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    25   1.5  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   1.5  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    23   4.5  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    23   4.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    23   5.9  
SPCC569.02c |||S. pombe specific UPF0321 family protein 2|Schizo...    23   7.8  
SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|ch...    23   7.8  
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp...    23   7.8  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 28.7 bits (61), Expect = 0.12
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 60  PAYFCREAVMRFSLKGGAAVVTIIETLELISQGG 161
           P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 230 RAQSPPGVKWLLEPIDIHDVNAPPTLRYKF*GLNYSYNGCPTL 102
           R Q+  G + L  P+ + D   PPT       L+  YN  P++
Sbjct: 225 RFQNTNGQRTLTVPVSVWDARQPPTSSRSGLPLSVMYNHFPSV 267


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 60  GWWYPPARTPQEVLPPVN 7
           GW Y PA+T + V P VN
Sbjct: 65  GWTYYPAKTEKNVEPIVN 82


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 145 LYLKVGGAFTSWMSMGSSNHFTP 213
           L+L  G  F +WMS  S NHF P
Sbjct: 335 LWLNEG--FATWMSWFSCNHFYP 355


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 227 AQSPPGVKWLLEPIDIHDVNAPPTLR 150
           A  PP +K    P+DI +++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 108 GAAVVTIIETLELISQGGWRIYVVD 182
           GA V  +   LEL  +GG+ I ++D
Sbjct: 11  GAGVFGLSAALELTKRGGYTIKILD 35


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 122 YNGCPTLQTETHYCFTA 72
           Y  CP L +   +CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


>SPCC569.02c |||S. pombe specific UPF0321 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 113

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = -1

Query: 227 AQSPPGVKWLLEPI-DIHDVNAPPTLRYKF*GLNYSYNGCPTLQTETHYCFTAEIGG 60
           A+ PP    LL  + D H +    T   +F   NY  N    + T+T  C    + G
Sbjct: 27  AKLPPKYAELLANLTDQHGMVLFDTADVRFEAYNYLVNNITEINTDTDACLCQLLTG 83


>SPBC119.09c |||ORMDL family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 186

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 110 GSRCNYN*DLRTYISRWVAHL 172
           GS  NYN +   Y   WV H+
Sbjct: 29  GSATNYNSNWVNYKGAWVIHI 49


>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 212 GVKWLLEPIDIHDVNAP-PTLRY 147
           GVK LL+ + +HD+  P P   Y
Sbjct: 269 GVKPLLDLLHVHDITIPWPVQNY 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,140,414
Number of Sequences: 5004
Number of extensions: 18774
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 45369236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)