Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40047
(876 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 77 3e-15
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po... 33 0.053
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po... 31 0.16
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.87
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 29 1.1
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 1.5
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 28 1.5
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 4.6
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 27 4.6
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 26 6.1
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.1
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 6.1
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 77.0 bits (181), Expect = 3e-15
Identities = 32/62 (51%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Frame = +1
Query: 343 SMPKGTFNMDDFKRVYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMTVT 516
S P G+F+++++KRVYSN+D + ++P+F+E FDPENYS+W +Y YPE+L + VFMT
Sbjct: 257 SAPNGSFDIEEYKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNN 316
Query: 517 LL 522
L+
Sbjct: 317 LI 318
Score = 44.0 bits (99), Expect = 3e-05
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Frame = +3
Query: 513 NLITGMFQRLDKMRKQAFASVCLFGEDNNSTISGVWVWRGKELV--FPLSSDLAVDYEFL 686
NLI G FQRL+ RK F + GE+ ++TI+G +V +G + V F ++ D Y F
Sbjct: 316 NLIGGFFQRLEASRKYIFGCCVVIGENGDNTITGAFVIKGHDYVPAFDVAPDWG-SYTFT 374
Query: 687 RLE 695
+L+
Sbjct: 375 KLD 377
Score = 29.9 bits (64), Expect = 0.50
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYD 181
TLAD+ L +VL S + ++ R++ T+ HQ ++ A+ L P
Sbjct: 156 TLADIFFTCFLKFGATYVLTKSYLAKYTHIYRYYQTIYHQAKLDAITEPLKFIDQPLPII 215
Query: 182 PKKYQELAGAQ 214
+ +E A A+
Sbjct: 216 KAENKEAAPAK 226
>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 472
Score = 33.1 bits (72), Expect = 0.053
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -1
Query: 606 WWNCCL-HQTGRRMRKPVCAFCLTSGTYP**GYSHEHLSEFLRVFVFGIPNGIVLG 442
WWNC Q R KPV F L P + + LS F FV + + +V+G
Sbjct: 359 WWNCWTWDQFARTWNKPVHYFLLRHVYVPLNSFMSKSLSTFFTFFVSSVLHELVMG 414
>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 220
Score = 31.5 bits (68), Expect = 0.16
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQV 130
TLAD+ S L F ++D R L ++ R+++T+ HQ ++
Sbjct: 161 TLADLFFGSLLRIFFNSIIDEKTRKELPHLTRYYITMFHQAKL 203
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.1 bits (62), Expect = 0.87
Identities = 17/64 (26%), Positives = 29/64 (45%)
Frame = -3
Query: 721 SSLERIQVSSSRRNS*STAKSDDSGNTSSFPRHTHTPEMVELLSSPNRQTDAKACLRILS 542
+SLER++ RN S ++GNT+S + H V+L + + I +
Sbjct: 790 TSLERLESQEPNRNELVQVGSSNAGNTTSVGMNEHEKSPVKLSKGVSNVDTSLGASTINT 849
Query: 541 NLWN 530
N+ N
Sbjct: 850 NILN 853
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Frame = -3
Query: 625 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRLQS 506
+ H P V+ L+ PN + CL IL WN PV+ L S
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNLNS 121
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 2 TLADVIVFSTLLHAFQHVLDPSVRSSLINVQRWFLTVAHQPQVSAVVGSLTLCAAPPTYD 181
++AD+ V++ + H++ L L NV RWF + HQ V S+++ A +
Sbjct: 145 SVADLAVYARI-HSYICGLSAKEGYKLNNVCRWFDFIQHQESVMEAANSMSMKLANIDLN 203
Query: 182 PKKYQ 196
K Q
Sbjct: 204 APKIQ 208
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +3
Query: 567 ASVCLFGEDNNSTISGVWVWRGKELVFPLSSDLAVDYEFLRLEETWILSSEETKKI--FP 740
+ +C F + T++G++ + G L+ DLA D+ + + W+ + + KK+ +P
Sbjct: 182 SKICNFYRGFSVTLTGIFPYAGMSF---LAYDLATDFFHKQKIDEWVSTKKSDKKLKTWP 238
Query: 741 RLL 749
LL
Sbjct: 239 ELL 241
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 26.6 bits (56), Expect = 4.6
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = +1
Query: 664 WQWTTSSYDWKKLGSFRA 717
W W+ S++ W+++GS A
Sbjct: 183 WSWSPSTWPWRQVGSLTA 200
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = -1
Query: 765 FRSHEEVVLEKFSWS----PRSKGSKFLPVVGTRSPL 667
F E LE FS S R K ++F P G RSPL
Sbjct: 226 FERSPETTLESFSSSISKKRRRKNAEFTPQAGARSPL 262
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 559 RLSHPSACLVKTTIPPSPECGCGAEKNSCSRCRLIWQ 669
++S+ + + +I PSPE C EK C++ WQ
Sbjct: 326 KVSNGAPLSLDMSIDPSPESTCFTEKRRCAK-HTSWQ 361
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 6.1
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 802 CPGLKFSTRFLSVSFPRRSSLGKIFLVSSLER-IQVSSSRRNS*STAKSDDS 650
CPG+ F SVS RR +L + + + L + +V S +++ ST KS S
Sbjct: 158 CPGIFEEDNFFSVSPKRRKNLFEKYGKTDLGKPARVPSPKKSLSSTIKSPPS 209
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 371 MISSVSTPTKTKLNLFLTSGRSLTPRTIPFGMPNTNTLRNSLRC 502
+++ +TP + +L SGRSL T G+ N +T + C
Sbjct: 843 LVTDTTTPYLSDFSLVNESGRSLLHLTAACGLSNASTFLCNAGC 886
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,712,879
Number of Sequences: 5004
Number of extensions: 80269
Number of successful extensions: 275
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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