Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40040
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27...    27   4.6  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   4.6  
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi...    26   8.1  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   8.1  

>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 153

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 659 YNVDLNLYLLRYYISVSFQISNIMNQEN*HPSIYRFRKYIDS 534
           + +D++L   R Y+ V F     + +    P+I R  KYI S
Sbjct: 105 FQMDVSLRKRRKYVGVVFDKETTLPRPKDEPTIRRVNKYITS 146


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 18/75 (24%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
 Frame = +3

Query: 84   FLLFVLSLFYTIM*VFYLSIEALRSLPGQPVLNKFQYTSYKL-EYKKLCVKPLLR*WPNY 260
            F  ++ SL   ++ +F   + ++ S+  + VL+ F      L +Y  + + P+LR +   
Sbjct: 923  FKPYLPSLLVMMLQIFDSDV-SVDSVSTKKVLHAFIVFGDTLADYFHMLLDPILRLYERN 981

Query: 261  EYSIGLKKFYLVSVG 305
            + SIG+K+  ++++G
Sbjct: 982  DVSIGIKESIMITIG 996


>SPBC18E5.05c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +3

Query: 54  FPLMCPPSDGFLLFVLSLFYTIM*VFYLSIE---ALRSLPGQPVLNKFQ 191
           +P   PP + FL F  +   +++ + +LS+E    +RSLP  P+L + Q
Sbjct: 139 YPSYLPPCEVFLDFTSTCTVSLIGMQHLSVEHDAKMRSLP-NPLLEELQ 186


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -2

Query: 533 ISDIDTRYKIRFDTRQNRYYPLLLRMH*RYINFFE 429
           + DID+R+ + F    + Y P+   +  R+++ FE
Sbjct: 397 LRDIDSRHLLEFTQTASLYRPMSKNLSMRFVSSFE 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,547,383
Number of Sequences: 5004
Number of extensions: 74807
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)