Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40009
         (876 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   8.1  
SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine l...    26   8.1  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 9   DRNGNTGMSSNNLDGNQQQLNAQVNNPSQNVEIKGCFPSSTETSRLNHLYNLQQH 173
           + N N+G  +NN  GN  Q + Q ++  Q +       SS  +++ N+  N  Q+
Sbjct: 566 NNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNNNQN 620


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 669  PVTCCR*GIQVLSCIGSQLSLYCLNRFCTSAG 574
            P T C    Q+L C+ SQ S+  L+RF T+ G
Sbjct: 2274 PQTLCDKIEQILPCLASQCSM--LSRFYTNGG 2303


>SPBC405.01 |ade1|min4, SPBC4C3.02c|phosphoribosylamine-glycine
           ligase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 788

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 657 NMLLAAPDLQLDWGLRL*FRMMMYNCWGPDVVWLNIQG 770
           N+++  P+L L  G+   FR +   C+GP  +   ++G
Sbjct: 72  NLVIPGPELPLVEGIEGHFRRVGIPCFGPSALAARMEG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,162
Number of Sequences: 5004
Number of extensions: 77366
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)