Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20168
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    28   1.1  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   7.7  

>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 337 YYIFQKTTVICWNINMYKYH-I*IIVF*CVDIL 432
           +YIFQ  ++I W+++ Y Y+ I I++   V IL
Sbjct: 334 FYIFQVFSIILWSMDSYYYYAICILIISVVSIL 366


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 228 NLSIVDLFLNLDRSFSLNAALNAFY*IIYLDNSLSIILHISKNNCYLLEH 377
           N+   +L L  + S+ LN A  +   I++LD+ + +   I  N  YL++H
Sbjct: 68  NIPRKELRLRPELSYLLNLASISSDDIVFLDDIVKLPKRIFSNPIYLVDH 117


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 155 PCSWLKISLFV*IIIIYFKYHTCILLFSLCT 63
           P  W+    +  I + Y   HT +LL+ + T
Sbjct: 297 PAGWMTFFYYFAISLAYMVLHTLVLLYQIIT 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,357
Number of Sequences: 5004
Number of extensions: 49112
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)