Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20158
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    30   0.19 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   0.57 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   0.75 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   0.99 
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   1.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    27   2.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.0  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    26   4.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   4.0  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   4.0  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.0  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.0  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   9.2  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.2  

>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 57   PTSATGSRAPRWPPTPSTGPSCSATRPTVISSIPRPP 167
            P++ + S  P+ PP  S  P  SATRP     IP+PP
Sbjct: 1043 PSALSPSVTPQLPPVSSRLPPVSATRP----QIPQPP 1075



 Score = 27.9 bits (59), Expect = 0.99
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 57   PTSATGSRAPRWPPTPSTGPSCSA-TRPTVISSIPR 161
            P SAT  + P+ PP  +  PS SA +RP + +S  R
Sbjct: 1063 PVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGR 1098


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +3

Query: 57  PTSATGSRAPRWPPTPSTGPSCSATRPTVISSIPRPPSRTWTWKTP 194
           PTSA   R    PP+P++ P   +  P + SS+P P       K+P
Sbjct: 140 PTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSP 184


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 28.3 bits (60), Expect = 0.75
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 VGGQRGALEPVADVGQVGDPAQVHRDR 20
           V G +G LEPV  VG V   A +H D+
Sbjct: 3   VEGDKGVLEPVNFVGPVTSLALIHNDK 29


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
 Frame = +3

Query: 18  TRSRCTCAGSPTCPTSATGSRAPRWPPTPSTGPSCSATR---PTVISSIP----RPPSRT 176
           T +  T    P   TS+TG+ +    P PST  SC+ +    PT  S+ P     PP+ T
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSS---PLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTST 364

Query: 177 WTWKTP 194
            +  TP
Sbjct: 365 SSTSTP 370



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
 Frame = +3

Query: 45  SPTCPTSATGSRAPRWPP--TPSTGPSCS-----ATRPTVISSIPRPPSRTWTWKTP 194
           +PT P ++T S +   PP  T STG S S     +T  T  +SIP P   + T  TP
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP-PTGNSTTPVTP 357



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 15  STRSRCTCAGSPTCPTSATGSRAPRWPPTPSTGPSCSATRPTVISSIP 158
           ST + CT + S     ++T    P  PPT S+ P  + T  T  +S+P
Sbjct: 388 STSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTP-LTTTNCTTSTSVP 434



 Score = 25.0 bits (52), Expect = 7.0
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
 Frame = +3

Query: 33  TCAGSPTCPTSATGSRAPRWPPTPSTGPSCSATR---PTVISSIP----RPPSRTWTWKT 191
           T + S   P ++T S      P P+T  SC+ +    PT  S+ P     PP+ T +  T
Sbjct: 256 TSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTST 315

Query: 192 P 194
           P
Sbjct: 316 P 316


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 32  YLRWITYLSYIRYGFEGTALATYSFNRTKLQC 127
           + RWI YL  +++GFE  +L    F   + +C
Sbjct: 709 WFRWIAYLDPLQFGFE--SLMINEFKARQFEC 738


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/20 (45%), Positives = 18/20 (90%)
 Frame = -1

Query: 457 KDRILSMQQNKLDYRILKKN 398
           K+RIL++++ K +Y+IL+K+
Sbjct: 62  KERILALEEKKTNYKILQKS 81


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +1

Query: 25  PGVPALDHLPVLHPLRVRGHRAGHLLLQQDQAAV 126
           PG+  +D   +   +R +G   G LL+Q+D++ +
Sbjct: 173 PGIFGIDTRALTKKIRDQGSMLGRLLIQKDESPI 206


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 130 VALQLGPV-EGVGGQRGALEPVADVGQVGDPAQVHRD 23
           + L+ GP+ E    + GAL P +D   V +P   HR+
Sbjct: 24  IDLEKGPLPEYDSEEEGALPPYSDHALVNNPPNTHRE 60


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = +2

Query: 32  YLRWITYLSYIRYGFEGTALATYSFNRTKLQCHAP 136
           + RWI Y + + YG+E   L  +          AP
Sbjct: 600 WFRWIAYANPVNYGYESIMLNEFDGREIPCSLMAP 634


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 130 VALQLGPV-EGVGGQRGALEPVADVGQVGDPAQVHRD 23
           + L+ GP+ E    + GAL P +D   V +P   HR+
Sbjct: 24  IDLEKGPLPEYDSEEEGALPPYSDHALVNNPPNTHRE 60


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = +3

Query: 45   SPTCPT-SATG-SRAPRWPPTPSTGPSCSATRPTVISSIP--RPPSRTWTWKTP 194
            SPT P+ S T  S +P  P    T PS SAT P+   + P   P S +++  +P
Sbjct: 1579 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSP 1632


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 93  PPTPSTGPSCSATRPTVISSIPRPPSRTWT 182
           P  PS   SCSA      ++IP+PP ++ T
Sbjct: 275 PRRPSATKSCSAAVDCPHTTIPKPPYQSDT 304


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 42  GSPTCPTSATGSRAPRWPPTPSTGPSCSATRPTVISSIPRPP 167
           G P     ++ S  P  PP P +  + S   P    S P PP
Sbjct: 323 GKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP 364


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +3

Query: 39  AGSPTCPTSATGSRAPRW---PPTPSTGPSCSATRP 137
           AGSP  P+S+T S +  +    P  S GP    T+P
Sbjct: 530 AGSPPSPSSSTKSASSSYSTTTPAFSIGPLTPMTKP 565


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +3

Query: 3   ARGRSTRSRCTCAGSPTCPTSATGSRAPRWPPTPSTGPS-CSATRPTVISSIPRPP 167
           +R + + SR T   +       T    P+ PP+PS+  S   + +P +    P+PP
Sbjct: 345 SRSQESASRSTIRSTDEREPERTSEDPPQLPPSPSSPSSPALSVKPNI---DPQPP 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,789,812
Number of Sequences: 5004
Number of extensions: 32293
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)