Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20144
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    27   2.7  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    25   8.2  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 445 YLAQVVRAPFYFFVFHLFYLILNSV 519
           YL ++VRAPFY +V  +    L+S+
Sbjct: 122 YLFKIVRAPFYIYVLLILSKRLHSI 146


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 104 SFMHYFKKILALCTSSLYSL*VWKISYSSVSAIFVKRDTNFLLHV 238
           ++ +YF  +L++  S+LY   +    Y+S+ +     DTNF  H+
Sbjct: 223 NYRYYFIFLLSVVLSALYLTGLG--FYTSIGSFHESTDTNFAAHL 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,361
Number of Sequences: 5004
Number of extensions: 59685
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)