Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20137
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    27   2.6  
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    27   3.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   4.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.6  
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21...    26   6.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   8.1  

>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 525 WSDVTDRCFNYIPINAIID 469
           W   TD CFN +PI AIID
Sbjct: 148 WKTFTD-CFNCLPIAAIID 165


>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 189 IDYCLSVCIMFTNIICFLNLTNYKSYTAASRRRAWGMWIFKIIKYPLLKFSSTLHFFNGR 368
           I + +S  I+F  ++  LN        A     ++ M    ++     +FSS +HF   R
Sbjct: 89  IFFAVSSQIVFAILVTILNKQALNIINAPLLMLSFQMAFTSLMVKMYWRFSS-VHFQTLR 147

Query: 369 LASNIEL*KYFTKKII 416
           LAS I+L K+   KI+
Sbjct: 148 LASAIQLKKFIFVKIL 163


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 690 YYNYLPQRKVFKIINDIQTDRIEPCVNNSDNK 595
           Y + LP+ K   +IN+ Q +++    NN +NK
Sbjct: 537 YSDCLPKLKAASVINNPQGEQLTDYENNQENK 568


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 612 NNSDNKLIFS**LI*KYVPILTILLCHASWSDVTDRCFNYI 490
           + SD K IF        +  L  L CH   S+V +RC +YI
Sbjct: 602 SESDKKYIFD-----LMIDHLLFLSCHKFASNVVERCISYI 637


>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
           Sds21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 525 WSDVTDRCFNYIPINAIID 469
           W   TD CFN +P+ A+ID
Sbjct: 145 WKTFTD-CFNCMPVAAVID 162


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 346 VEENFRRGYLIILNIHIPQALLRDAAV 266
           V++N   GYL++  +  PQ +L +  V
Sbjct: 892 VQKNIYHGYLMVSELSTPQVMLEELGV 918


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,717,606
Number of Sequences: 5004
Number of extensions: 53132
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)