Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00046
         (510 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16E9.15 |||heat shock factor binding protein |Schizosaccharo...    29   0.31 
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    29   0.53 
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   1.2  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    27   1.2  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    26   2.9  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    26   2.9  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    26   2.9  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   3.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.8  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.0  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   5.0  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    25   5.0  
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   5.0  
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.6  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   8.7  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    25   8.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   8.7  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    25   8.7  

>SPBC16E9.15 |||heat shock factor binding protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 75

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 404 TDRLIEMQYGNFNTTQNVNDKKLTQMQEQVDRLE 505
           TD+L+E   G+F T Q    +KL  M  ++D+LE
Sbjct: 22  TDKLLEDISGDFETLQKQFSEKLETMSTRLDQLE 55


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 28.7 bits (61), Expect = 0.53
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +3

Query: 117 LITKTEQKIKNSNRHLNDVTAK-INLGNVTLDGI 215
           + T    +I NSN  +ND+T+K +++G +TL  I
Sbjct: 172 ITTPYSNRITNSNTSVNDITSKYLSVGTITLTTI 205


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +2

Query: 239 IESYRLGNNATKLQEANLEGALNLTREAKHRAVKALNDANH----LQNDIAKTDRQLKNT 406
           +  ++      +L+   L   ++LT+  K  A K  +  N     LQN + K    LKNT
Sbjct: 409 LNDFKAEKETNRLKLEGLNKQISLTKPKKAEATKRCDQLNREIDILQNHVEKLKMSLKNT 468

Query: 407 D 409
           +
Sbjct: 469 N 469



 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/69 (21%), Positives = 31/69 (44%)
 Frame = +3

Query: 39  ENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLDGIR 218
           ++I +  K  +  I  L + ++  +   T   +K+  +   LND  A+     + L+G+ 
Sbjct: 368 QSISKDFKSQEELISSLTTGLSTTEGHETGYSRKLHEARDTLNDFKAEKETNRLKLEGLN 427

Query: 219 KETDKLKSK 245
           K+    K K
Sbjct: 428 KQISLTKPK 436


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 69  QSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGNVTLD--GIRKETDKLKS 242
           ++ I  L S++TN Q      ++KI   N  ++++  K+N  N       I  E   +K+
Sbjct: 565 ETQIKSLESSLTNSQAECVSFQEKINELNSQIDELKLKLNEANKKYQELAISFENSNVKT 624

Query: 243 KAID 254
           ++++
Sbjct: 625 QSVE 628


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = +3

Query: 21  TKLMTIENIIQREKEGQSTIPDLLSNIT-NIQKLI--TKTEQKIKNS-NRHLNDVTAKI- 185
           T+ +   NI+Q  KE  + + +L+SNIT + QKL+     + K+ NS    L D   K+ 
Sbjct: 199 TECLNPINIVQAPKECAAILVNLMSNITQDDQKLVFLDLLKSKVGNSIYSQLVDGGRKLF 258

Query: 186 --NLGNVTLDGIRKETDKL 236
              L N  +  IR + D+L
Sbjct: 259 LPKLRNWFVSAIRSKHDEL 277


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +3

Query: 60  KEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKI 185
           K  QS  PD+L+ I NI+ L  K E   ++S + +N++ + +
Sbjct: 122 KSFQSIGPDVLNEIHNIEHLPKKDES--EDSGKEINNMVSAV 161


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 36  IENIIQREKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKINLGN 197
           IEN+ Q   E      DL + I    +L+T  E  + N++ +  + + ++ + N
Sbjct: 179 IENLTQGINELNEIFRDLSTIINEQGELVTNIEYNVGNTSTNTKNASRQLQIAN 232


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 84  DLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKIN 188
           DL+  IT +Q ++ K   + +  +R ++ +  K+N
Sbjct: 193 DLIKQITELQDMLDKARDQARKKSRTVDILEGKVN 227


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = +3

Query: 9   DEMTTKLMTIENIIQ-REKEGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDVTAKI 185
           +++T +L ++++I + +EK+ +  I  L    +NIQ  +T    +   +   LND+   +
Sbjct: 673 EQLTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLNDLEKSL 732

Query: 186 NLGNVTLDGIRKETDKLKSK 245
            L   + D + +    L+ +
Sbjct: 733 VLSERSKDELDESYKSLQEQ 752


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 63  EGQSTIPDLLSNITNIQKLITKTEQKIKNSNRHLNDV--TAKINL 191
           E    +  LL     I K + K E+K+KN N  L +   T K+N+
Sbjct: 198 ENGKKVKYLLDENGEILKRLVKKEKKLKNDNERLENEHRTEKLNV 242


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
 Frame = +2

Query: 125 KNRTKNKKQQQASK*CDSQNKSRKRHFGW--YKKRNR*IKIESYRLGNNATKLQEANLEG 298
           +++T  + ++ A+K    +   +++  G   YKKRN  + IE Y+   +  K    ++  
Sbjct: 245 EDKTAEELEEAATKEALKKKADQEKQIGNENYKKRNFPVAIEQYKKAWDTYK----DITY 300

Query: 299 ALNLTREAKHRAVKALNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTT 448
             NL   A +     L+D      D  +  R+L+   +LI    G   TT
Sbjct: 301 LNNLA--AAYFEADQLDDCIKTCEDAIEQGRELRADFKLIAKALGRLGTT 348


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 344 LNDANHLQNDIAKTDRQLKNTDRLIEMQYGNFNTTQNVNDKK 469
           LNDA +L ++      ++ N   L+     N N+ QNV + +
Sbjct: 734 LNDATYLLDEALLKLTEIHNLQSLLADAISNSNSNQNVQESQ 775


>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 368 NDIAKTDRQLKNTDRLIEMQYGNFNTTQNVNDKKLTQMQEQVDRLE 505
           ND+    ++LK  +   +    +FN + ++   K  Q++EQ  +LE
Sbjct: 58  NDLRSKTKELKAENEKEDTFLNSFNASGDLTANKKIQLREQSRKLE 103


>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 341 ALNDANHLQNDIAKTDRQLKNTDRLI 418
           A ND + L ND  +T + LKN+  ++
Sbjct: 97  AENDLHPLDNDSTRTSKTLKNSSEVL 122


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 39   ENIIQREKEGQSTIPDLLSNITNIQKL-ITKTE-QKIKNSNRHLNDVTAKINLGNVTLDG 212
            E    ++K+   +I D L   +++    +T  E +K  +SN H++ +TA  NL  +  D 
Sbjct: 777  ETAANKDKQELKSIADSLPPPSSLVGFRLTPAEFEKDDDSNHHIDFITAASNLRAMNYD- 835

Query: 213  IRKETDKLKSKAID*ETTP 269
                 D+ K+K +  +  P
Sbjct: 836  -ITPADRFKTKFVAGKIVP 853


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 141 IKNSNRHLNDVTAKINLGNVTLDGIRKETDKLKSKAID 254
           ++N N+H N VT+  NL       IR+   +++    D
Sbjct: 276 VENKNKHTNLVTSSFNLTKPMKSFIRRNGLRVQESVTD 313


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 91 NKSGMVDCPSFSLWIMFSMVI 29
          N S ++D PSF+ W+ FS  I
Sbjct: 28 NCSLVIDGPSFAFWLWFSQGI 48


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 36  IENIIQREKEGQSTIPDLLS----NITNIQKLITKTEQKIKNS 152
           + N IQR++EG  + P   +    N TN++K I   E  + N+
Sbjct: 38  LRNAIQRQREGSQSKPQGANVDRVNSTNLEKDIDLQESLLTNN 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,793,266
Number of Sequences: 5004
Number of extensions: 30005
Number of successful extensions: 125
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)