Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0268.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core ...    34   0.018
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida...    31   0.13 

>SPCC613.10 |qcr2||ubiquinol-cytochrome-c reductase complex core
           protein Qcr2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 426

 Score = 33.9 bits (74), Expect = 0.018
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +3

Query: 264 VTIAFKAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDREFI 440
           +++   AGSRY+P A  G+SH+L      TT   S+    R+   +G  +S    RE I
Sbjct: 45  LSVVINAGSRYQPDA--GVSHLLEKFAFKTTEERSALRITRESELLGGQLSTQITREHI 101


>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
           complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 494

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +3

Query: 279 KAGSRYEPQAELGLSHVLGSAGGLTTXNISSXLXQRKLSQIGAYVSASGDREFIXY 446
           KAGSRYE +   G+SH +       T        + KL  +G     S  RE + Y
Sbjct: 74  KAGSRYETKKFSGVSHFMDRLAFQATERTPVGEMKAKLENLGGNYMCSTSRESMIY 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,459
Number of Sequences: 5004
Number of extensions: 26439
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)