Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0251.Seq
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c...    35   0.012
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.4  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   9.5  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   9.5  

>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 221

 Score = 35.1 bits (77), Expect = 0.012
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +3

Query: 354 KILCIGLNYKDHCQEQNLTPPPVPMVFSKFSSTIIGP 464
           K++CIG NY  H +E N   P  P  F K +S I+ P
Sbjct: 7   KVVCIGRNYAAHIRELNNPFPTKPFFFLKPTSAIVEP 43


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 285 KSTKPATIPLSSVTLTAPIHGVDKILCIGLNYKDHC 392
           K   P + PL S+T   P H  DK   + +N ++ C
Sbjct: 185 KMPSPNSQPLQSITPNYPTHREDKFDLLIINIEEAC 220


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 172 HVYFLDYLCMKTEL 131
           H YF D+LC+ TEL
Sbjct: 767 HFYFRDHLCVATEL 780


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 176 ATWKEMIL*ILIRRTPVCRPLCSKYSEWRLRKSEEVEINKTSNYTTIISHSNCTH 340
           A +KE +   +IR     +P+ + ++EWR  +    +I K      +   S+C H
Sbjct: 299 AEFKEKVSSAIIR---CLQPISTSFNEWRQNRELLRDIAKKGAEEAVAEASSCMH 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,848
Number of Sequences: 5004
Number of extensions: 51783
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)