Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30276.Seq
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   104   8e-24
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   104   8e-24
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    29   0.46 
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    29   0.61 
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   4.3  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.3  
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    25   10.0 

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  104 bits (250), Expect = 8e-24
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +1

Query: 16  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRXTVKGGGHVAQVYAIRQLFQR 267
            IR  V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 98.3 bits (234), Expect = 7e-22
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  104 bits (250), Expect = 8e-24
 Identities = 47/84 (55%), Positives = 63/84 (75%)
 Frame = +1

Query: 16  IQAVQVFGRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMV 195
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV P +L+ K+ EPIL+ G +KF+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 196 XIRXTVKGGGHVAQVYAIRQLFQR 267
            IR  V GGGHV+Q+YAIRQ   +
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISK 84



 Score = 98.3 bits (234), Expect = 7e-22
 Identities = 45/60 (75%), Positives = 52/60 (86%)
 Frame = +3

Query: 255 AISKALIAFYQKYVDEASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 434
           AISKA++A+YQK+VDE SK E+K  L+ YDR+LLVADPRR EPKKFGG GARAR QKSYR
Sbjct: 81  AISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRRMEPKKFGGHGARARQQKSYR 140


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 29.1 bits (62), Expect = 0.46
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 37  GRKXTATAVAYCKRGHGMLRVNGRPLDLVXPRLLQYKLQEPILLLGKEKFSMVXIRXTVK 216
           G++ ++ A      G G   VNG P D+   R++  K      L    + +   +  TV 
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 217 GGGHVAQVYAI 249
           GGG   Q  A+
Sbjct: 71  GGGPTGQSGAV 81


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 218 VVVM*HKFTLSDSYFKGSDRLLPEICR 298
           V+V   KF   D+Y KG+  ++P IC+
Sbjct: 766 VIVKHGKFKKMDAYVKGAPEIMPSICK 792


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 255 LSDSVNLCYMTTTLDCXSDXNH-REFFLAEQ 166
           LS+  N CYM + L C +     R+FF +++
Sbjct: 313 LSNLGNTCYMNSALQCLTHTRELRDFFTSDE 343


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 138 QQSGXNQVQWAPVYTQHSMTTLAIRNCGGGXLTSEYLDGLDGLT 7
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 415 DTRNLTVKPSRKPSGGIVAASCCH 486
           D  N+ VKP+  P+  +    CCH
Sbjct: 566 DRFNVIVKPALNPAERMTVRICCH 589


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,088
Number of Sequences: 5004
Number of extensions: 39207
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)