Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30220.Seq
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   112   4e-26
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   112   4e-26
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.44 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.0  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   3.1  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    26   4.1  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   7.1  
SPCC191.05c |||nucleoside 2-deoxyribosyltransferase |Schizosacch...    25   9.4  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    25   9.4  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   9.4  
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    25   9.4  
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S...    25   9.4  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.4  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  112 bits (269), Expect = 4e-26
 Identities = 56/92 (60%), Positives = 65/92 (70%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
           TG VYNVT  ++GV++ K V G  Y    ++V
Sbjct: 61  TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91



 Score =  103 bits (246), Expect = 2e-23
 Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVS 142

Query: 434 -GTEKPVLLAPIPYE 475
               +PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  112 bits (269), Expect = 4e-26
 Identities = 56/92 (60%), Positives = 65/92 (70%)
 Frame = +3

Query: 9   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 188
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 189 TGRVYNVTAHALGVIVNKRVRGGLYRSASISV 284
           TG VYNVT  ++GV++ K V G  Y    ++V
Sbjct: 61  TGVVYNVTQSSVGVLIYK-VVGNRYMEKRVNV 91



 Score =  102 bits (245), Expect = 3e-23
 Identities = 48/75 (64%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
 Frame = +2

Query: 254 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVS 433
           R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAKA GKTV L+RQPAPP  AH VS
Sbjct: 83  RYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVS 142

Query: 434 -GTEKPVLLAPIPYE 475
               +PV L P+ Y+
Sbjct: 143 TENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
 Frame = -3

Query: 448 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 284
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 283 TDIDALRYNPPR 248
               ++RY+  R
Sbjct: 504 RAFGSIRYSGGR 515


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 121 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 5
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 80  YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 184
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 230 DCQQACSRRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 400
           +C + CS  + P    I     +  K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 157 ECIRLCSL-VHPNDPAILALSKELQKKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 359 EAKAAGKTVNLKRQPAPPKAAHIVSGT 439
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +3

Query: 267 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 446
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 447 P 449
           P
Sbjct: 115 P 115


>SPCC191.05c |||nucleoside 2-deoxyribosyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -3

Query: 379 LAGSLGFLQ*PLILFDSLKEVLSALGV 299
           LAG L F    + LFD LKE+    GV
Sbjct: 22  LAGDLVFRPNAIELFDELKEICKDAGV 48


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -2

Query: 203 VHATCLSMVYFVWHTLLNCTIASDVYNVSNFVHFHVRGERNSS 75
           + + C   V    H  +  T+   V    N +H++   ERNS+
Sbjct: 83  IASLCFEDVIDTSHVSIKLTLPKCVLRSKNGLHYYAERERNST 125


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 288 SMSSTPSADKTSLRE 332
           SMSS+P+A +TSLR+
Sbjct: 163 SMSSSPTASRTSLRK 177


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 326 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 454
           K+ KE +  LK E+     T  +  QP P       SGTE  V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312


>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 326 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 448
           K +++ ER+ K      +  NL+R   PPK     + +E P
Sbjct: 83  KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -3

Query: 403  WLSLQVDGLAGSLGF 359
            WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,091,440
Number of Sequences: 5004
Number of extensions: 41784
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)