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Last updated: 2022/09/19
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= psV30124.Seq
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    89   4e-19
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    85   1e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    81   2e-16
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.3  
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy...    25   7.5  
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    25   7.5  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.9  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 45/104 (43%), Positives = 62/104 (59%)
 Frame = +1

Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
           + RK++QL RL QINNGVFV+ NKAT  ML++ EPY+ +G PNLK+VREL+         
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVN 165

Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
                    A++       ++  +   IHEI+TVG  FK A+NF
Sbjct: 166 KQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQAANF 209



 Score = 49.6 bits (113), Expect = 4e-07
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +2

Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
           GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 81  GNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +3

Query: 69  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 248
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 249 EID 257
           +I+
Sbjct: 70  QIE 72


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 84.6 bits (200), Expect = 1e-17
 Identities = 42/104 (40%), Positives = 60/104 (57%)
 Frame = +1

Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
           + RK++QL RL QINNG+FV+ NKA   ML++ EPY+ +G PN K+VREL+         
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVN 164

Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
                    A++       ++  +   IHEI+TVG  FK A+NF
Sbjct: 165 KQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANF 208



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/34 (58%), Positives = 24/34 (70%)
 Frame = +2

Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
           GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 80  GNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 90  PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEID 257
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIE 71


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 44/104 (42%), Positives = 56/104 (53%)
 Frame = +1

Query: 355 EVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVSNVDSPS*V 534
           ++RKVL+L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVREL+         
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKIN 163

Query: 535 DNVYQSLPTALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNF 666
                    AL+        +  +   IHEI+ VG  FK  + F
Sbjct: 164 GQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKF 207



 Score = 36.7 bits (81), Expect = 0.003
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 90  PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 254
           PE +LK            ++  + ++ +  K ++E FKRAE ++  YR +ER+ I
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERI 69



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 281 GNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 382
           G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 79  GDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 559  TALLRRGSINTTLSVLRTFIHEIFTVGEKFKYASNFP 669
            T  L R + +T +SVL +F+H+      + K +S +P
Sbjct: 2294 TMRLLRSNQDTLMSVLESFLHDPLVEWNRKKSSSKYP 2330


>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -2

Query: 260 LVDFITFLDAVFLDVLFSPLEDFPLLL 180
           LVDFI  L +V++D  F+ LE  PL++
Sbjct: 211 LVDFIIRLYSVYVDCQFTYLEINPLVV 237


>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 278 DCVLVWLVDFITFLDAVFLDVLFS 207
           +C++  L+ F+TF   V LD +FS
Sbjct: 410 NCIISILILFLTFAGTVTLDAVFS 433


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -2

Query: 668  GKLLAYLNFSPTVKISWMKVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFDT 504
            G LL    FS  + I + KVL   +  ++EP +  A+ SD       +GE  F+T
Sbjct: 1280 GDLLELACFS--MMIDFFKVLPEFSSSYVEPTIKCALASDRAFEHDAIGELLFET 1332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,864
Number of Sequences: 5004
Number of extensions: 52859
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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